Bioconductor version: Release (3.13)
A pipeline for identifying differentially methylated CpG sites using Hidden Markov Model in bisulfite sequencing data.
Author: Farhad Shokoohi [aut, cre]
Maintainer: Farhad Shokoohi <shokoohi at icloud.com>
Citation (from within R,
enter citation("DMCHMM")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DMCHMM")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DMCHMM")
HTML | R Script | Sending Messages With Gmailr |
Reference Manual | ||
Text | NEWS |
biocViews | Coverage, DifferentialMethylation, HiddenMarkovModel, Sequencing, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (4 years) |
License | GPL-3 |
Depends | R (>= 4.0.0), SummarizedExperiment, methods, S4Vectors, BiocParallel, GenomicRanges, IRanges, fdrtool |
Imports | utils, stats, grDevices, rtracklayer, multcomp, calibrate, graphics |
LinkingTo | |
Suggests | testthat, knitr |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/shokoohi/DMCHMM/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DMCHMM_1.14.0.tar.gz |
Windows Binary | DMCHMM_1.14.0.zip |
macOS 10.13 (High Sierra) | DMCHMM_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DMCHMM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DMCHMM |
Package Short Url | https://bioconductor.org/packages/DMCHMM/ |
Package Downloads Report | Download Stats |
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