ChromHeatMap

DOI: 10.18129/B9.bioc.ChromHeatMap    

Heat map plotting by genome coordinate

Bioconductor version: Release (3.13)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChromHeatMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF	R Script	Plotting expression data with ChromHeatMap
PDF		Reference Manual

Details

biocViews	Software, Visualization
Version	1.46.0
In Bioconductor since	BioC 2.5 (R-2.10) (12 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports	Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
LinkingTo
Suggests	ALL, hgu95av2.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChromHeatMap_1.46.0.tar.gz
Windows Binary	ChromHeatMap_1.46.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	ChromHeatMap_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ChromHeatMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChromHeatMap
Package Short Url	https://bioconductor.org/packages/ChromHeatMap/
Package Downloads Report	Download Stats