BiocWorkflowTools

DOI: 10.18129/B9.bioc.BiocWorkflowTools    

Tools to aid the development of Bioconductor Workflow packages

Bioconductor version: Release (3.13)

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej Oleś [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")

 

HTML	R Script	Converting Rmarkdown to F1000Research LaTeX Format
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ReportWriting, Software
Version	1.18.0
In Bioconductor since	BioC 3.4 (R-3.3) (5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	RNAseq123
Imports Me
Suggests Me	BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocWorkflowTools_1.18.0.tar.gz
Windows Binary	BiocWorkflowTools_1.18.0.zip
macOS 10.13 (High Sierra)	BiocWorkflowTools_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocWorkflowTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocWorkflowTools
Package Short Url	https://bioconductor.org/packages/BiocWorkflowTools/
Package Downloads Report	Download Stats