topTable {variancePartition}R Documentation

toptable for definition

Description

toptable for definition

toptable for FMT

toptable for MArrayLM2

Usage

topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "B",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

## S4 method for signature 'FMT'
topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "p",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

## S4 method for signature 'MArrayLM2'
topTable(
  fit,
  coef = NULL,
  number = 10,
  genelist = fit$genes,
  adjust.method = "BH",
  sort.by = "p",
  resort.by = NULL,
  p.value = 1,
  lfc = 0,
  confint = FALSE
)

Arguments

fit

fit

coef

coef

number

number

genelist

genelist

adjust.method

adjust.method

sort.by

sort.by

resort.by

resort.by

p.value

p.value

lfc

lfc

confint

confint

Value

results of toptable

results of toptable

results of toptable


[Package variancePartition version 1.22.0 Index]