ctxsearch {ssrch} | R Documentation |
ssrch demo with metadata documents from 68 cancer transcriptomics studies
ctxsearch()
Simply starts an app.
The metadata were derived by extracting sample.attributes fields from a search with github.com/seandavi/SRAdbV2. The sample.attributes content varies between studies and sometimes between experiments within studies. The field sets were unified with the sampleAtts function of github.com/vjcitn/HumanTranscriptomeCompendium. After unification records were stacked and CSVs were written.
if (interactive()) { oask = options()$example.ask options(example.ask=FALSE) try(ctxsearch2()) options(example.ask=oask) }