specL-class {specL} | R Documentation |
"specL"
This class is used to store, print, and plot the generated results of the package.
Objects can be created by calls of the form new("specL", ...)
.
group_id
:Object of class "character"
just an id
peptide_sequence
:Object of class "character"
AA
sequence
proteinInformation
:Object of class "character"
a
string contains the protein identifier.
q1
:Object of class "numeric"
peptide weight m/Z as
measured by the MS device
q1.in_silico
:Object of class "numeric"
peptide weight m/Z computed in-silico.
q3
:Object of class "numeric"
measured fragment ions.
q3.in_silico
:Object of class "numeric"
in-silico
derived fragment ions.
score
:Object of class "numeric"
taken from bibliospec - psm score
prec_z
:Object of class "numeric"
pre-cursor charge.
frg_type
:Object of class "character"
fragmenbt ion
type, e.g., b or y ion.
frg_nr
:Object of class "numeric"
fragment ion number
frg_z
:Object of class "numeric"
fragment ion charge.
relativeFragmentIntensity
:Object of class "numeric"
percentage base peaks of frament ions.
irt
:Object of class "numeric"
independent retention
time in seconds.
peptideModSeq
:Object of class "numeric"
a vector
contains the mass diff between AA and mod AA.
mZ.error
:Object of class "numeric"
a string contains
the protein identifier.
filename
:Object of class "character"
a string contains
the filename of the ions.
signature(x = "specL")
: plots the fragment ions of specL
object.
signature(x = "specL")
: shows the content of specL
object.
signature(x = "specL")
: writes the specL
object to a ASCII file.
No notes yet.
Christian Panse 2014
showClass("specL")