specLSet-class {specL} | R Documentation |
"specLSet"
This class is used to store, show, and write generated results of the package.
Objects can be created by calls of the form new("specLSet", ...)
.
input.parameter
:A list of parameter values.
ionlibrary
:A list of "specL"
objects.
rt.normalized
:A numeric vector of normalized retention time values.
rt.input
:A numeric vector of retention time values.
signature(x = "specLSet")
: shows the object content.
signature(x = "specLSet")
: print summary of object content.
signature(x = "specLSet")
: plots normalized versus input rt.
signature(x = "specLSet")
: writes object to ASCII file.
signature(x = "specLSet")
: generates consensus specLSet object by combining all specL objects having a redundant group_id which is defined by paste(x@q1.in_silico, x@peptideModSeq, sep='_')
.
signature(x = "specLSet")
: merges two specLSet objects.
signature(x = "specLSet")
: returns a list of specL
objects.
signature(x = "specLSet")
: returns a numeric vector of input rt values.
signature(x = "specLSet")
: returns a numeric vector of normalized rt values.
signature(x = "specLSet")
: returns table of peptide protein mappings.
No notes yet.
Christian Panse 2014
showClass("specL") showClass("specLSet")