exportSCEToSeurat {singleCellTK} | R Documentation |
Export data in Seurat object
exportSCEToSeurat( inSCE, prefix = "sample", outputDir = "./", overwrite = TRUE, copyColData = TRUE, copyReducedDim = TRUE, copyDecontX = TRUE )
inSCE |
A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object. |
prefix |
Prefix to use for the name of the output file. Default |
outputDir |
Path to the directory where outputs will be written. Default is the current working directory. |
overwrite |
Boolean. Whether overwrite the output if it already exists in the outputDir. Default |
copyColData |
Boolean. Whether copy 'colData' of SCE object to the 'meta.data' of Seurat object. Default |
copyReducedDim |
Boolean. Whether copy 'reducedDims' of the SCE object to the 'reductions' of Seurat object. Default |
copyDecontX |
Boolean. Whether copy 'decontXcounts' assay of the SCE object to the 'assays' of Seurat object. Default |
Generates a Seurat object containing data from inSCE
.