plotClusterAbundance {singleCellTK}R Documentation

Plot the differential Abundance

Description

Plot the differential Abundance

Usage

plotClusterAbundance(inSCE, cluster, variable)

Arguments

inSCE

A SingleCellExperiment object.

cluster

A single character, specifying the name to store the cluster label in colData.

variable

A single character, specifying the name to store the phenotype labels in colData.

Details

This function will visualize the differential abundance in two given variables, by making bar plots that presents the cell counting and fraction in different cases.

Value

A list with 4 ggplot objects.

Examples

data("mouseBrainSubsetSCE", package = "singleCellTK")
plotClusterAbundance(inSCE = mouseBrainSubsetSCE,
                     cluster = "tissue",
                     variable = "level1class")

[Package singleCellTK version 2.2.0 Index]