DO_similarity {simplifyEnrichment}R Documentation

Calculate Disease Ontology (DO) semantic similarity matrix

Description

Calculate Disease Ontology (DO) semantic similarity matrix

Usage

DO_similarity(do_id, measure = "Rel")

Arguments

do_id

A vector of DO IDs.

measure

Semantic measure for the DO similarity, pass to doSim.

Details

This function is basically a wrapper on doSim.

Value

A symmetric matrix.

Examples


require(DOSE)
do_id = random_DO(10)
DO_similarity(do_id)


[Package simplifyEnrichment version 1.2.0 Index]