inferStrain {sesame}R Documentation

Infer strain information for mouse array

Description

Infer strain information for mouse array

Usage

inferStrain(vafs, strain_snp_table = NULL)

Arguments

vafs

Variant allele frequency vector

strain_snp_table

if not given download the default from sesameData

Value

a list of best guess, p-value of the best guess and the probabilities of all strains

Examples

sesameDataCache("MM285") # if not done yet
sset <- sesameDataGet('MM285.1.NOD.FrontalLobe')
vafs <- betaToAF(getBetas(dyeBiasNL(noob(sset))))
inferStrain(vafs)

[Package sesame version 1.10.5 Index]