getAFTypeIbySumAlleles {sesame} | R Documentation |
Takes a SigSet
as input and returns a numeric vector containing
extra allele frequencies based on Color-Channel-Switching (CCS) probes.
If no CCS probes exist in the SigSet
, then an numeric(0) is
returned.
getAFTypeIbySumAlleles(sset, known.ccs.only = TRUE)
sset |
|
known.ccs.only |
consider only known CCS probes |
beta values
sesameDataCache("EPIC") # if not done yet sset <- sesameDataGet('EPIC.1.LNCaP')$sset betas <- getAFTypeIbySumAlleles(sset)