inferStrain {sesame} | R Documentation |
Infer strain information for mouse array
inferStrain(vafs, strain_snp_table = NULL)
vafs |
Variant allele frequency vector |
strain_snp_table |
if not given download the default from sesameData |
a list of best guess, p-value of the best guess and the probabilities of all strains
sesameDataCache("MM285") # if not done yet sset <- sesameDataGet('MM285.1.NOD.FrontalLobe') vafs <- betaToAF(getBetas(dyeBiasNL(noob(sset)))) inferStrain(vafs)