SigSet-class {sesame} | R Documentation |
This is the main data class for SeSAMe. The class holds different classes of signal intensities.
The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".
The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".
## S4 method for signature 'SigSet' initialize(.Object, platform, ...) SigSet(...)
.Object |
target object |
platform |
"EPIC", "HM450", "HM27" or other strings for custom arrays |
... |
additional arguments |
a SigSet
object
a SigSet
object
IG
intensity table for type I probes in green channel
IR
intensity table for type I probes in red channel
II
intensity table for type II probes
oobG
out-of-band probes in green channel
oobR
out-of-band probes in red channel
ctl
all the control probe intensities
pval
named numeric vector of p-values
extra
extra data, currently, IGG => Type-I green that is inferred to be green IRR => Type-I red that is inferred to be red pvals => list of other pvals
platform
"EPIC", "HM450" or "HM27"
## Create an empty EPIC object. SigSet("EPIC") SigSet('EPIC')