cxds_bcds_hybrid {scds} | R Documentation |
Annotates doublets/multiplets using the hybrid approach
cxds_bcds_hybrid(sce, cxdsArgs = NULL, bcdsArgs = NULL, verb = FALSE, estNdbl = FALSE, force = FALSE)
sce |
single cell experiment ( |
cxdsArgs |
list, arguments for cxds function in list form. Default: NULL |
bcdsArgs |
list, arguments for bcds function in list form. Default: NULL |
verb |
logical, switch on/off progress messages |
estNdbl |
logical, should the numer of doublets be estimated from the data. Enables doublet calls. Default:FALSE. Use with caution. |
force |
logical, force a (re)run of |
sce input sce object SingleCellExperiment
with doublet scores added to colData as "hybrid_score" column.
data("sce_chcl") ## create small data set using only 100 cells sce_chcl_small = sce_chcl[, 1:100] sce_chcl_small = cxds_bcds_hybrid(sce_chcl_small)