scTHI_plotPairs {scTHI} | R Documentation |
Generates a plot on the t-SNE coordinates to show the expression levels of an interaction pair of interest. Each cell is colored according to the corresponding gene expression value.
scTHI_plotPairs(scTHIresult, cexPoint = 0.8, interactionToplot)
scTHIresult |
scTHI object. |
cexPoint |
Set the point size. |
interactionToplot |
Interaction pair to plot. |
None
library(scTHI.data) data(scExample) result <- scTHI_score(scExample, cellCusterA = colnames(scExample)[1:30], cellCusterB = colnames(scExample)[31:100], cellCusterAName = "ClusterA", cellCusterBName = "ClusterB", filterCutoff = 0, pvalueCutoff = 1, nPermu = 100, ncore = 8) result <- scTHI_runTsne(result) scTHI_plotPairs(result,interactionToplot = "CXCL12_CD4")