UMI_duplication {scPipe} | R Documentation |
This data.frame contains UMI duplication statistics, where the first column is the number of duplication, and the second column is the count of UMIs.
sc_sample_qc
a data.frame instance, one row per cell.
NULL, but makes a data frame with UMI dulication statistics
Luyi Tian
Christin Biben (WEHI). She FACS sorted cells from several immune cell types including B cells, granulocyte and some early progenitors.
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts =as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication head(UMI_dup_info(sce))