scHOT_stripOutput {scHOT} | R Documentation |
Strip the scHOT output
scHOT_stripOutput(scHOT, force = TRUE, store = FALSE, file_name = NULL)
scHOT |
A scHOT object |
force |
A logical indicates whther forcing stripping the scHOT output |
store |
A logical flag on whether the scHOT should be stored as .rds file |
file_name |
A string indicates the file name of the scHOT will be stored |
A scHOT object with scHOT_output striped
data(MOB_subset) sce_MOB_subset <- MOB_subset$sce_MOB_subset scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset, assayName = "logcounts", positionType = "spatial", positionColData = c("x", "y")) scHOT_spatial <- scHOT_stripOutput(scHOT_spatial)