compute_kernel_matrix {scAlign} | R Documentation |
Adds the defined kernel to the operation graph for high dimensional pairwise data similarity
compute_kernel_matrix( data, data_shape, labels = NULL, method = NULL, perplexity = 30, diag = "zero" )
data |
cell x feature data matrix |
data_shape |
number of features for data |
labels |
cell x 1 annotation (label) vector |
method |
Kernel to compute pairwise cell similarity |
perplexity |
neighborhood parameter for gaussian kernel |
diag |
indicator for self similarity |
Tensorflow op