encoderModel_calc_embedding {scAlign}R Documentation

Compute embedding for complete data after training

Description

Takes the high dimensional data through the neural network to embedding layer

Usage

encoderModel_calc_embedding(
  sess,
  data,
  endpoint,
  test_in,
  FLAGS,
  batch_size = 150
)

Arguments

sess

Current tensorflow session

data

Input matrix or tensor to reduce to embedding space

endpoint

Operation to evaluate in the graph

test_in

Placeholder to process full data in batches

FLAGS

Tensorflow run arguments

batch_size

how many cells per each batch

Value

Aligned data embedding


[Package scAlign version 1.6.0 Index]