get_internal_region_lengths {ribor} | R Documentation |
The function get_internal_region_coordinates
retrieves the
lengths for the UTR5, UTR5 Junction, CDS, UTR3 Junction,
and UTR3 regions of every transcript.
get_internal_region_lengths(ribo.object, alias = FALSE)
ribo.object |
A 'Ribo' object |
alias |
Option to return the transcript names as aliases |
A data.frame of the region lengths
# generate a ribo object file.path <- system.file("extdata", "HEK293_ingolia.ribo", package = "ribor") sample <- Ribo(file.path, rename = rename_default) # get the region lengths region_lengths <- get_internal_region_lengths(sample, alias = TRUE)