get_gene_synonyms {regutools} | R Documentation |
Given a list of genes (id, name, bnumber or gi), get the gene synonyms (name, bnumber of gi).
get_gene_synonyms( regulondb, genes, from = "name", to = c("id", "name", "bnumber", "gi") )
regulondb |
A |
genes |
Character vector of gene identifiers (id, name, bnumber or gi). |
from |
A |
to |
A |
A regulondb_result object.
Jesús Emiliano Sotelo Fonseca
## Connect to the RegulonDB database if necessary if (!exists("regulondb_conn")) regulondb_conn <- connect_database() ## Build the regulon db object e_coli_regulondb <- regulondb( database_conn = regulondb_conn, organism = "E.coli", database_version = "1", genome_version = "1" ) ## Lists all available identifiers for "araC" get_gene_synonyms(e_coli_regulondb, "araC", from = "name") ## Retrieve only the ID get_gene_synonyms(e_coli_regulondb, "araC", from = "name", to = "id") ## Use an ID to retrieve the synonyms get_gene_synonyms(e_coli_regulondb, "ECK120000998", from = "id")