convert_to_biostrings {regutools} | R Documentation |
This function converts, when possible, a regulon_result object into a Biostrings object.
convert_to_biostrings(regulondb_result, seq_type = "DNA")
regulondb_result |
A regulon_result object. |
seq_type |
A character string with either DNA or protein, specyfing what |
A XStringSet object.
Alejandro Reyes
## Connect to the RegulonDB database if necessary if (!exists("regulondb_conn")) regulondb_conn <- connect_database() ## Build the regulon db object e_coli_regulondb <- regulondb( database_conn = regulondb_conn, organism = "E.coli", database_version = "1", genome_version = "1" ) ## Obtain all the information from the "GENE" dataset convert_to_biostrings(get_dataset(e_coli_regulondb, dataset = "GENE"))