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| ramwas::RW1_intro | 1. Overview | HTML | source | R code | |
| ramwas::RW2_CpG_sets | 2. CpG sets | HTML | source | R code | |
| ramwas::RW3_BAM_QCs | 3. BAM Quality Control Measures | HTML | source | R code | |
| ramwas::RW4_SNPs | 4. Joint Analysis of Methylation and Genotype Data | HTML | source | R code | |
| ramwas::RW5a_matrix | 5.a. Analyzing Illumina Methylation Array Data | HTML | source | R code | |
| ramwas::RW5c_matrix | 5.c. Analyzing data from other sources | HTML | source | R code | |
| ramwas::RW6_param | 6. RaMWAS parameters | HTML | source | R code |