read_content {qckitfastq} | R Documentation |
Compute nucleotide content per position. Wrapper function around seqTools.
read_content(fseq, output_file = NA)
fseq |
a seqTools::fastqq object |
output_file |
File to write results in CSV format to. Will not write to file if NA. Default NA. |
Data frame of nucleotide sequence content per position
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") fseq <- seqTools::fastqq(infile,k=6) read_content(fseq)