qual_score_per_read {qckitfastq} | R Documentation |
Calculate the mean quality score per read of the FASTQ gzipped file
qual_score_per_read(infile)
infile |
A string giving the path for the fastqfile |
mean quality per read
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") qual_score_per_read(infile)$q50_per_position[1:10]