loadGtexData {psichomics} | R Documentation |
Download and load GTEx data
loadGtexData( folder = getDownloadsFolder(), data = getGtexDataTypes(), tissue = NULL, release = getGtexReleases()[[1]], progress = TRUE )
folder |
Character: folder containing data |
data |
Character: data types to load (see |
tissue |
Character: tissues to load (if |
release |
Numeric: GTEx data release to load |
progress |
Boolean: display progress? |
List with loaded data
Other functions associated with GTEx data retrieval:
getDownloadsFolder()
,
getGtexDataTypes()
,
getGtexTissues()
Other functions to load data:
loadLocalFiles()
,
loadSRAproject()
,
loadTCGAdata()
## Not run: # Download and load all available GTEx data data <- loadGtexData() # Download and load only junction quantification and sample info from GTEx getGtexDataTypes() data <- loadGtexData(data=c("sampleInfo", "junctionQuant")) # Download and load only data for specific tissues getGtexTissues() data <- loadGtexData(tissue=c("Stomach", "Small Intestine")) # Download and load data from a specific GTEx data release data <- loadGtexData(tissue=c("Stomach", "Small Intestine"), release=7) ## End(Not run)