scrna_evalPlot_overall {pipeComp} | R Documentation |
Plots a multi-level summary heatmap of many analyses of the 'scrna_pipeline'.
scrna_evalPlot_overall( res, agg.by = NULL, width = NULL, datasets_as_columnNames = TRUE, rowAnnoColors = NULL, column_names_gp = gpar(fontsize = 10), column_title_gp = gpar(fontsize = 12), heatmap_legend_param = list(by_row = TRUE, direction = "horizontal", nrow = 1), ... )
res |
Aggregated pipeline results (i.e. the output of 'runPipeline' or 'aggregateResults') |
agg.by |
The paramters by which to aggregate. |
width |
The width of individual heatmap bodies. |
datasets_as_columnNames |
Logical; whether dataset names should be printed below the columns (except for silhouette) rather than using a legend. |
rowAnnoColors |
Optional list of colors for the row annotation variables (passed to 'HeatmapAnnotation(col=...)') |
column_names_gp |
Passed to each calls to 'Heatmap' |
column_title_gp |
Passed to each calls to 'Heatmap' |
heatmap_legend_param |
Passed to each calls to 'Heatmap' |
... |
Passed to each calls to 'Heatmap' |
A HeatmapList
library(ComplexHeatmap) data("exampleResults") h <- scrna_evalPlot_overall(exampleResults) draw(h, heatmap_legend_side="bottom")