adjustDataset {phantasus} | R Documentation |
Adjust dataset
adjustDataset( es, scaleColumnSum = NULL, log2 = FALSE, onePlusLog2 = FALSE, inverseLog2 = FALSE, quantileNormalize = FALSE, zScore = FALSE, robustZScore = FALSE, sweep = NULL )
es |
Expression set to perform adjustment on |
scaleColumnSum |
perform sum scaling of columns (default FALSE) |
log2 |
perform logarithm2 adjustment (default FALSE) |
onePlusLog2 |
perform log2(1+x) adjustment (default FALSE) |
inverseLog2 |
perform 2^x adjustment (default FALSE) |
quantileNormalize |
perform quantile normalization (default FALSE) |
zScore |
perform zScore adjustment: subtract mean, divide by std (default FALSE) |
robustZScore |
perform robustZScore adjustment: subtract median, divide by MAD (default FALSE) |
sweep |
perform sweep adjustment on rows/columns (default FALSE) |
Nothing. Adjusted dataset will be assigned as ES in global environment
## Not run: es <- gseGSE('GSE53986')[[1]] adjustDataset(es, log2 = T, quantileNormalize = T) ## End(Not run)