packsToFasta {packFinder} | R Documentation |
Saves a dataframe of potential Pack-TYPE elements,
usually generated via packSearch
.
May be retrieved using getPacksFromFasta
.
packsToFasta(packMatches, file, Genome)
packMatches |
taframe containing genomic ranges and names referring
to sequences to be extracted. Can be obtained from
|
file |
FASTA file save path. |
Genome |
A DNAStringSet object containing sequences referred to
in |
Save location of Fasta file.
Jack Gisby
data(arabidopsisThalianaRefseq) data(packMatches) packsToFasta( packMatches, system.file("extdata", "packMatches.fasta", package = "packFinder"), arabidopsisThalianaRefseq )