getPacksFromFasta {packFinder}R Documentation

Retrieve Saved packFinder Results (.fasta)

Description

Retrieves a dataframe of potential Pack-TYPE elements, previously saved using packSearch followed by packsToFasta. Parses the .fasta file and title field containing:

Usage

getPacksFromFasta(file)

Arguments

file

Path to predicted transposons in FASTA format.

Value

Dataframe in the format used by packSearch.

Author(s)

Jack Gisby

See Also

packsToFasta, packSearch

Examples

data(arabidopsisThalianaRefseq)
data(packMatches)

packMatches <- getPacksFromFasta(
    system.file("extdata", "packMatches.fasta", package = "packFinder")
)


[Package packFinder version 1.4.0 Index]