basicRMA {oligo} | R Documentation |
Simple interface to RMA.
basicRMA(pmMat, pnVec, normalize = TRUE, background = TRUE, bgversion = 2, destructive = FALSE, verbose = TRUE, ...)
pmMat |
Matrix of intensities to be processed. |
pnVec |
Probeset names. |
normalize |
Logical flag: normalize? |
background |
Logical flag: background adjustment? |
bgversion |
Version of background correction. |
destructive |
Logical flag: use destructive methods? |
verbose |
Logical flag: verbose. |
... |
Not currently used. |
Matrix.
set.seed(1) pms <- 2^matrix(rnorm(1000), nc=20) colnames(pms) <- paste("sample", 1:20, sep="") pns <- rep(letters[1:10], each=5) res <- basicRMA(pms, pns, TRUE, TRUE) res[, 1:3]