get.subnets,NetResponseModel-method {netresponse} | R Documentation |
List the detected subnetworks (each is a list of nodes in the corresponding subnetwork).
## S4 method for signature 'NetResponseModel' get.subnets( model, get.names = TRUE, min.size = 2, max.size = Inf, min.responses = 2 )
model |
Output from the detect.responses function. An object of NetResponseModel class. |
get.names |
Logical. Indicate whether to return subnetwork nodes using node names (TRUE) or node indices (FALSE). |
min.size, max.size |
Numeric. Filter out subnetworks whose size is not within the limits specified here. |
min.responses |
Numeric. Filter out subnetworks with less responses (mixture components) than specified here. |
A list of subnetworks.
Leo Lahti leo.lahti@iki.fi
Leo Lahti et al.: Global modeling of transcriptional responses in interaction networks. Bioinformatics (2010). See citation('netresponse') for details.
## Load a pre-calculated netresponse model obtained with # model <- detect.responses(toydata$emat, toydata$netw, verbose = FALSE) # data( toydata ); get.subnets(toydata$model)