runStereogene {nearBynding}R Documentation

runStereogene

Description

Writes a StereoGene script in the working directory

Usage

runStereogene(track_files, name_config, pcorProfile = NULL, confounder = NULL)

Arguments

track_files

Vector of at least two track or interval file names to be pairwise-correlated by StereoGene. Required.

name_config

Name of corresponding configuration file; a string. Required

pcorProfile

Name of track file name for partial correlation; a string. More information for this can be found in the StereoGene README. Optional

confounder

Confounder file name; a string. More information for this can be found in the StereoGene README. Optional

Value

generates StereoGene output files in directory

Examples

runStereogene(track_files = c("chr4and5_3UTR_stem_liftOver.bedGraph",
                             "chr4and5_liftOver.bedGraph"),
             name_config = "chr4and5_3UTR.cfg")


[Package nearBynding version 1.2.0 Index]