muscle-package {muscle} | R Documentation |
MUSCLE performs multiple sequence alignments of nucleotide and amino acid sequences.
Details about the algorithm can be found on the MUSCLE website:
http://www.drive5.com/muscle/
Algorithm: Robert C. Edgar
R port: Alex T. Kalinka alex.t.kalinka@gmail.com
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
## Align sequences in an XStringSet object. ## Not run: aln <- muscle(stringset = umax) ## End(Not run)