com_dis,mina,ANY-method {mina}R Documentation

Calculate the community dissimilarity / distance matrix of 'norm' with 'mina' class object as input.

Description

Calculate the community dissimilarity / distance matrix of 'norm' with 'mina' class object as input.

Usage

## S4 method for signature 'mina,ANY'
com_dis(x, method = "bray", threads = 80, nblocks = 400, ...)

## S4 method for signature 'mina,character'
com_dis(x, method = "bray", threads = 80, nblocks = 400, ...)

Arguments

x

An object of the class 'mina' with 'norm' defined.

method

The dissimilarity / distance method used, default 'bray'.

threads

(optional, only needed when method == "tina") The number of threads used for parallel running.

nblocks

(optional, only needed when method == "tina") The number of row / column for splitted sub-matrix.

...

Additional parameters.

Value

x The same 'mina' object with @dis added.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "total")
maize <- fit_tabs(maize)
maize <- com_dis(maize, method = "bray")

[Package mina version 1.0.0 Index]