sparcc {mina}R Documentation

Function for 'sparcc' correlation calculation. Modified from Schmidt et al. 2016, find the scripts here and the SparCC paper here.

Description

Function for 'sparcc' correlation calculation. Modified from Schmidt et al. 2016, find the scripts here and the SparCC paper here.

Usage

sparcc(x, threads = 80, nblocks = 400)

Arguments

x

An matrix for correlation calculation.

threads

The number of threads used for parallel running, 80 by default.

nblocks

The number of row /column for splitting sub-matrix, 400 by default.

Value

y The adjacency matrix.

Examples

## Not run: 
asv_sparcc <- sparcc(maize_asv2, threads = 2, nblocks = 40)

## End(Not run)

[Package mina version 1.0.0 Index]