com_plot {mina} | R Documentation |
Visulization of components distance / dissimilarity in k dimension.
com_plot(x, match, ...)
x |
An object of class 'mina' with 'dmr' and 'des' defined. |
match |
The column name of the components IDs in 'des' which exactly the same indicated in 'dmr'. |
... |
Additional parameters. |
The PCoA plot.
maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref", depth = 5000) maize <- fit_tabs(maize) maize <- com_dis(maize, method = "bray") maize <- dmr(maize) p1a <- com_plot(maize, match = "Sample_ID", color = "Compartment") p1b <- com_plot(maize, match = "Sample_ID", d1 = 3, d2 = 4, color = "Compartment") p2a <- com_plot(maize, match = "Sample_ID", color = "Host_genotype") p2b <- com_plot(maize, match = "Sample_ID", d1 = 1, d2 = 3, color = "Host_genotype") p3a <- com_plot(maize, match = "Sample_ID", color = "Compartment", shape = "Soil") p3b <- com_plot(maize, match = "Sample_ID", d1 = 1, d2 = 4, color = "Compartment", shape = "Soil")