ssPermAnalysis {metagenomeSeq} | R Documentation |
Calculates the fit for each permutation and estimates the area under the null (permutted) model for interesting time intervals of differential abundance.
ssPermAnalysis( data, formula, permList, intTimes, timePoints, include = c("class", "time:class"), ... )
data |
Data used in estimation. |
formula |
Formula for ssanova. Of the form: abundance ~ ... where ... includes any pData slot value. |
permList |
A list of permutted class memberships |
intTimes |
Interesting time intervals. |
timePoints |
Time points to interpolate over. |
include |
Parameters to include in prediction. |
... |
Options for ssanova |
A matrix of permutted area estimates for time intervals of interest.
cumNorm
fitTimeSeries
ssFit
ssPerm
ssIntervalCandidate
# Not run