plotClassTimeSeries {metagenomeSeq} | R Documentation |
Plot the abundance of values for each class using a spline approach on the estimated full model.
plotClassTimeSeries( res, formula, xlab = "Time", ylab = "Abundance", color0 = "black", color1 = "red", include = c("1", "class", "time:class"), ... )
res |
Output of fitTimeSeries function |
formula |
Formula for ssanova. Of the form: abundance ~ ... where ... includes any pData slot value. |
xlab |
X-label. |
ylab |
Y-label. |
color0 |
Color of samples from first group. |
color1 |
Color of samples from second group. |
include |
Parameters to include in prediction. |
... |
Extra plotting arguments. |
Plot for abundances of each class using a spline approach on estimated null model.
data(mouseData) res = fitTimeSeries(obj=mouseData,feature="Actinobacteria", class="status",id="mouseID",time="relativeTime",lvl='class',B=10) plotClassTimeSeries(res,pch=21,bg=res$data$class,ylim=c(0,8))