zigControl {metagenomeSeq} | R Documentation |
Settings for the fitZig function
zigControl( tol = 1e-04, maxit = 10, verbose = TRUE, dfMethod = "modified", pvalMethod = "default" )
tol |
The tolerance for the difference in negative log likelihood estimates for a feature to remain active. |
maxit |
The maximum number of iterations for the expectation-maximization algorithm. |
verbose |
Whether to display iterative step summary statistics or not. |
dfMethod |
Either 'default' or 'modified' (by responsibilities). |
pvalMethod |
Either 'default' or 'bootstrap'. |
The value for the tolerance, maximum no. of iterations, and the verbose warning.
fitZig
makes use of zigControl.
control = zigControl(tol=1e-10,maxit=10,verbose=FALSE)