split_fastq {icetea} | R Documentation |
Split paired-end fastq by barcodes
split_fastq( expType, idx_name, outfile_R1, outfile_R2, fastq_R1, fastq_R2, max_mismatch )
expType |
character. experiment type (RAMPAGE, MAPCap or CAGE) |
idx_name |
character. barcode ID |
outfile_R1 |
character. output fastq file : Read 1 |
outfile_R2 |
character. output fastq file : Read 2 |
fastq_R1 |
character. input fastq file : Read 1 |
fastq_R2 |
character. input fastq file : Read 2 |
max_mismatch |
integer. max allowed mismatches |
kept reads corresponding to each barcode.