rctbl_hyp {hypeR} | R Documentation |
Reactable table for hyp objects
rctbl_hyp( hyp, type = c("inner", "outer"), show_emaps = FALSE, show_hmaps = FALSE, hyp_emap_args = list(top = 25, val = "fdr"), hyp_hmap_args = list(top = 25, val = "fdr") )
hyp |
A hyp object |
type |
Use style class for outer or inner tables |
show_emaps |
Option to show enrichment maps in tabs |
show_hmaps |
Option to show hiearchy maps in tabs |
hyp_emap_args |
A list of keyword arguments passed to hyp_emap |
hyp_hmap_args |
A list of keyword arguments passed to hyp_hmap |
genesets <- msigdb_gsets("Homo sapiens", "C2", "CP:KEGG")$genesets[1:5] signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502", "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC", "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2") hyp_obj <- hypeR(signature, genesets, background=2522) rctbl_hyp(hyp_obj)