msigdb_download {hypeR}R Documentation

Download data from msigdb in the form of a named list

Description

Download data from msigdb in the form of a named list

Usage

msigdb_download(species, category, subcategory = "")

Arguments

species

A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)

category

Geneset category (refer to ?msigdbr::msigdbr for avilable categories)

subcategory

Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories)

Value

A list of genesets

Examples

HALLMARK <- msigdb_download("Homo sapiens", "H", "")


[Package hypeR version 1.8.0 Index]