gwcat_snapshot {gwascat}R Documentation

use AnnotationHub snapshot as basis for gwaswloc structure creation

Description

use AnnotationHub snapshot as basis for gwaswloc structure creation

Usage

gwcat_snapshot(x, fixNonASCII = TRUE)

Arguments

x

inherits from data.frame, with columns consistent with EBI table

fixNonASCII

logical(1) if TRUE, use iconv to replace non-ASCII character, important for CMD check but perhaps not important for applied use

Examples

ah = AnnotationHub::AnnotationHub()
entitytab = AnnotationHub::query(ah, "gwascatData")
cand = names(entitytab)[1]
stopifnot(nchar(cand)>0)
tab = ah[[cand]]
gww = gwcat_snapshot(tab)
gww
length(gww)

[Package gwascat version 2.24.0 Index]