evaluateHMMInAnnotations {groHMM} | R Documentation |
Evaluates HMM calling of transripts compared to known annotations.
evaluateHMMInAnnotations(tx, annox)
tx |
GRanges of transcripts predicted by HMM. |
annox |
GRanges of non-overlapping annotatoins. |
a list of error information; merged annotations, dissociated annotation, total, and rate.
Minho Chae
tx <- GRanges("chr7", IRanges(start=seq(100, 1000, by=200), width=seq(100, 1000, by=100)), strand="+") annox <- GRanges("chr7", IRanges(start=seq(110, 1100, by=150), width=seq(100, 1000, by=150)), strand="+") error <- evaluateHMMInAnnotations(tx, annox)