stability {gespeR} | R Documentation |
Retrieve a Phenotypes
object with stability values from a
gespeR
object.
stability(object) ## S4 method for signature 'gespeR' stability(object)
object |
A |
A Phenotypes
object of SSPs
Fabian Schmich
phenos <- Phenotypes(system.file("extdata", "Phenotypes_screen_A.txt", package = "gespeR"), type = "SSP", col.id = 1, col.score = 2) trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR"))) res <- gespeR(phenotypes = phenos, target.relations = trels, mode = "stability", nbootstrap = 100, fraction = 0.67, threshold = 0.75, EV = 1, weakness = 0.8, ncores = 1) stab <- stability(res) ans <- merge(as.data.frame(gsp(res)), as.data.frame(stability(res)), by = "ID") colnames(ans)[2:3] <- c("Phenotype", "Stability") ans[order(ans$Stability, decreasing = TRUE),]