getNormBeta {funtooNorm} | R Documentation |
Computes Beta values from normalized signals
getNormBeta(object, offset = 100) ## S4 method for signature 'SampleSet' getNormBeta(object, offset = 100)
object |
of type SampleSet |
offset |
default is 100 as Illumina standard |
a matrix containing beta after normalization value for each CpG position and each samples
SampleSet
: Computes Beta values from normalized signals
require(minfiData) pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3) mySampleSet=fromRGChannelSet(RGsetEx) b=getNormBeta(funtooNorm(mySampleSet))