convertFishalyserCsvToCountMatrix {frenchFISH} | R Documentation |
Function to convert CSV output of the FISHalyseR automatic FISH splot counting software to a count matrix suitable for input to frenchFISH's getAutomaticCountsEstimates
convertFishalyserCsvToCountMatrix(pathToFishalyserCsv)
pathToFishalyserCsv |
The path to the CSV file of automatic spot counts outputted by FISHalyseR |
A count matrix suitable for input to getAutomaticCountsEstimates
probeCounts<-convertFishalyserCsvToCountMatrix( system.file("extdata", "SampleFISH.jpg_data.csv", package="frenchFISH"))