deg.up.down.info {fCI} | R Documentation |
given expression matrix, find targets and their detailed expression changes
deg.up.down.info(wt.index.in.list, df.index.in.list, npci, use.normalization = FALSE, target.ratio = 0.5)
wt.index.in.list |
a list of numeric values representing the column indexes for control samples |
df.index.in.list |
a list of numeric values representing the column indexes for experimental samples |
npci |
the object npci |
use.normalization |
a boolean value indicating if the normalization will be applied or not |
target.ratio |
a numeric value indicating the expected fold changes, i.e, 1.5 |
TBD
expression ratio |
a dataframe of fCI gene expression ratios (folds) defined by control-control index and control-case index |
TBD
Shaojun Tang
http://software.steenlab.org/fCI/
TBD
print("TBC")