disj_background {exomePeak2} | R Documentation |
Find the background of the user provided modification.
disj_background( mod_gr, txdb, background_bins = NULL, background_types = c("Gaussian_mixture", "m6Aseq_prior", "manual", "all"), control_width = 50, rename_mod = FALSE )
mod_gr |
A |
txdb |
A |
background_bins |
A Granges object for background bins. |
background_types |
A logical value, TRUE if the region of 5'UTR and long exons of the transcripts should be dropped in control region; Default TRUE. |
control_width |
A integer for the minimum width of the control region returned; default 50. |
rename_mod |
Whether to rename the returned modification sites, default = FALSE. |
A GRangesList
object.
The first portion is the exons regions that is not overlapped with annoation
.
If the resulting ranges have less number and width compared with what defined in cut_off_num
,
the exon regions of txdb will be returned as the background.
The second portion is the reconstructed provided modification with gene id mod_grated.