epivizNav {epivizrChart}R Documentation

Initialize an EpivizNavigation object to visualize in viewer or knit to HTML.

Description

Initialize an EpivizNavigation object to visualize in viewer or knit to HTML.

Usage

epivizNav(
  chr = NULL,
  start = NULL,
  end = NULL,
  parent = NULL,
  interactive = FALSE,
  ...
)

Arguments

chr

The chromosome to filter on, e.g., chr="chr11".

start

The start location, e.g., start=99800000.

end

The end location, e.g., end=130383180.

parent

An object of class [EpivizEnvironment] or EpivizNavigation to append the chart within.

interactive

(logical) enable if running a websocket/shiny server

...

Additional arguments for initializing navigation, e.g., gene and geneInRange.

Value

An object of class EpivizNavigation.

Examples

epiviz <- epivizNav(chr="chr11", start=99800000, end=103383180)


[Package epivizrChart version 1.14.0 Index]