addNormalizedAssays {diffUTR}R Documentation

addNormalizedAssays

Description

addNormalizedAssays

Usage

addNormalizedAssays(se, readLength = 50L)

Arguments

se

A bin-wise 'SummarizedExperiment' as produced by countFeatures

readLength

Used as a minimum width to estimate read density (default 50).

Value

The 'se' object with populated 'logcpm' and 'logNormDensity' assays.

Examples

data(example_bin_se)
example_bin_se <- addNormalizedAssays(example_bin_se)

[Package diffUTR version 1.0.0 Index]