rowNumbers {cyanoFilter} | R Documentation |
returns the position of the cells below, above or between estimated gates
rowNumbers(flowframe, gates, ch)
flowframe |
after debris are removed. |
gates |
cut point between the identified clusters |
ch |
gated channel |
a numeric vector
flowfile_path <- system.file("extdata", "B4_18_1.fcs", package = "cyanoFilter", mustWork = TRUE) flowfile <- flowCore::read.FCS(flowfile_path, alter.names = TRUE, transformation = FALSE, emptyValue = FALSE, dataset = 1) flowfile_nona <- cyanoFilter::noNA(x = flowfile) flowfile_noneg <- cyanoFilter::noNeg(x = flowfile_nona) flowfile_logtrans <- cyanoFilter::lnTrans(x = flowfile_noneg, c('SSC.W', 'TIME')) oneDgate(flowfile, 'RED.B.HLin')