create_differential_topology {condiments} | R Documentation |
This creates a simulated reduced dimension dataset
create_differential_topology( n_cells = 200, noise = 0.15, shift = 10, unbalance_level = 0.9, speed = 1 )
n_cells |
The number of cells in the dataset. |
noise |
Amount of noise. Between 0 and 1. |
shift |
How much should the top lineage shift in condition B. |
unbalance_level |
How much should the bottom lineage be unbalanced toward condition A. |
speed |
How fast the cells from condition B should differentiate |
A list with two components
sd
: An n_cells
by 4
dataframe that contains the
reduced dimensions coordinates, lineage assignment (1 or 2) and condition
assignment (A or B) for each cell.
mst
: a data.frame that contains the skeleton of the trajectories
sd <- create_differential_topology()