condenseSE {compartmap} | R Documentation |
Condense the output of condenseRE to reconstruct per-sample GRanges objects to plot
condenseSE(obj, sample.name = NULL)
obj |
Output of condenseRE or can be a RaggedExperiment |
sample.name |
Vector of samples/cells to extract |
GRanges or list of per-sample GRanges to pass to plotAB or export
grl <- GRangesList(GRanges(c("A:1-5", "A:4-6", "A:10-15"), score=1:3), GRanges(c("A:1-5", "B:1-3"), score=4:5)) names(grl) <- c("A", "B") x <- RaggedExperiment(grl) condense.x <- condenseSE(x, sample.name = "A")