PartnerGene-class {chimeraviz} | R Documentation |
The PartnerGene class represents one of the genes in a fusion event.
name
Character containing name of the gene.
ensembl_id
Character containing ensembl id for the gene.
chromosome
Character containing chromosome name.
breakpoint
Numeric containing the fusion breakpoint.
strand
Character containing gene strand.
junction_sequence
Biostrings::DNAString containing the sequence right before/after the fusion breakpoint.
transcripts
GenomicRanges::GRangesList containing three GenomicRanges::Granges() objects, one for each "transcript type". The transcript types are: 1) Transcripts where the fusion breakpoint hits an exon boundary, 2) transcripts where the fusion breakpoint is within an exon, 3) transcripts where the fusion breakpoint is within an intron.