celdaHeatmap {celda} | R Documentation |
Render a stylable heatmap of count data based on celda clustering results.
celdaHeatmap( sce, useAssay = "counts", altExpName = "featureSubset", featureIx = NULL, nfeatures = 25, ... ) ## S4 method for signature 'SingleCellExperiment' celdaHeatmap( sce, useAssay = "counts", altExpName = "featureSubset", featureIx = NULL, nfeatures = 25, ... )
sce |
A SingleCellExperiment object returned by celda_C, celda_G, or celda_CG. |
useAssay |
A string specifying which assay slot to use. Default "counts". |
altExpName |
The name for the altExp slot to use. Default "featureSubset". |
featureIx |
Integer vector. Select features for display in heatmap. If
NULL, no subsetting will be performed. Default NULL. Only used for
|
nfeatures |
Integer. Maximum number of features to select for each
gene module. Default 25. Only used for |
... |
Additional parameters passed to plotHeatmap. |
list A list containing dendrogram information and the heatmap grob
'celdaTsne()' for generating 2-dimensional tSNE coordinates
data(sceCeldaCG) celdaHeatmap(sceCeldaCG)