logLikelihood {celda} | R Documentation |
Calculate the log-likelihood for cell population and feature module cluster assignments on the count matrix, per celda model.
logLikelihood(x, celdaMod, useAssay = "counts", altExpName = "featureSubset") ## S4 method for signature 'SingleCellExperiment,ANY' logLikelihood(x, useAssay = "counts", altExpName = "featureSubset") ## S4 method for signature 'matrix,celda_C' logLikelihood(x, celdaMod) ## S4 method for signature 'matrix,celda_G' logLikelihood(x, celdaMod) ## S4 method for signature 'matrix,celda_CG' logLikelihood(x, celdaMod)
x |
A SingleCellExperiment object returned by
celda_C, celda_G, or celda_CG, with the matrix
located in the |
celdaMod |
celda model object. Ignored if |
useAssay |
A string specifying which assay slot to use. Default "counts". |
altExpName |
The name for the altExp slot to use. Default "featureSubset". |
The log-likelihood of the cluster assignment for the provided SingleCellExperiment.
'celda_C()' for clustering cells
data(sceCeldaC, sceCeldaCG) loglikC <- logLikelihood(sceCeldaC) loglikCG <- logLikelihood(sceCeldaCG)