getCMapConditions {cTRAP} | R Documentation |
Downloads metadata if not available
getCMapConditions( metadata, cellLine = NULL, timepoint = NULL, dosage = NULL, perturbationType = NULL, control = FALSE )
metadata |
Data frame (CMap metadata) or character (respective filepath) |
cellLine |
Character: cell line (if |
timepoint |
Character: timepoint (if |
dosage |
Character: dosage (if |
perturbationType |
Character: type of perturbation (if |
control |
Boolean: show controls for perturbation types? |
List of conditions in CMap datasets
Other functions related with the ranking of CMap perturbations:
as.table.referenceComparison()
,
filterCMapMetadata()
,
getCMapPerturbationTypes()
,
loadCMapData()
,
loadCMapZscores()
,
parseCMapID()
,
plot.perturbationChanges()
,
plot.referenceComparison()
,
plotTargetingDrugsVSsimilarPerturbations()
,
prepareCMapPerturbations()
,
print.similarPerturbations()
,
rankSimilarPerturbations()
## Not run: cmapMetadata <- loadCMapData("cmapMetadata.txt", "metadata") ## End(Not run) getCMapConditions(cmapMetadata)