biscuitMetadata {biscuiteer} | R Documentation |
Returns metadata from a Biscuit run using either a supplied VCF file or the vcfHeader metadata element from the bsseq object
biscuitMetadata(bsseq = NULL, VCF = NULL) getBiscuitMetadata(bsseq = NULL, VCF = NULL)
bsseq |
A bsseq object with a vcfHeader element (DEFAULT: NULL) |
VCF |
A tabix'ed VCF file (can just be the header information) from which the bsseq vcfHeader element is derived (DEFAULT: NULL) |
Information regarding the Biscuit run
getBiscuitMetadata
: Alias for biscuitMetadata
orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz", package="biscuiteer") orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz", package="biscuiteer") bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf, merged = FALSE) meta <- biscuitMetadata(bisc)