plotBeadLocations {beadarray} | R Documentation |
Can plot where specified beads, or bead types were located on the array surface
plotBeadLocations(BLData, ProbeIDs = NULL, BeadIDs = NULL, array = 1, SAM = FALSE, xCol = "GrnX", yCol = "GrnY", xlab = "x-coordinate", ylab = "y-coordinate", horizontal = TRUE, main = paste("Bead", ProbeIDs, "locations"), ...)
BLData |
a |
ProbeIDs |
a list of ArrayAddress IDs to plot |
BeadIDs |
a list of beads (rows in the beadLevelData object) to plot |
array |
the number of the section to plot |
SAM |
if TRUE the array is treated as a Sentrix Array Matrix (hexagonal) |
xCol |
column name for the x coordinates |
yCol |
column name for the x coordinates |
xlab |
optional label for the x axis |
ylab |
optional label for the y axis |
horizontal |
if TRUE the longest edge of the array surface will be plotted on the x axis |
main |
an optional title for the plot |
... |
any arguments to be passed to plots |
plot to current graphical device
Mark Dunning
if(require(beadarrayExampleData)){ data(exampleBLData) ##Plot location of first 100 beads as they are listed in beadLevelData object plotBeadLocations(exampleBLData, BeadIDs = 1:100, array=1, horizontal = FALSE) }