barcode_binary_heatmap {barcodetrackR} | R Documentation |
Creates a binary heatmap showing the absence or presence of new clones in samples ordered from L to R in the SummarizedExperiment.
barcode_binary_heatmap( your_SE, plot_labels = NULL, threshold = 0, your_title = NULL, label_size = 12, return_table = FALSE )
your_SE |
A Summarized Experiment object. |
plot_labels |
Vector of x axis labels. Defaults to colnames(your_SE). |
threshold |
Clones with a proportion below this threshold will be set to 0. |
your_title |
The title for the plot. |
label_size |
The size of the column labels. |
return_table |
Logical. Whether or not to return table of barcode sequences with their presence or absence in each sample indicated as a 1 or 0 resepctively in the value column column. |
Displays a binary heat map in the current plot window. Or if return_table is set to TRUE, returns a dataframe indicating the presence or absence of each barcode in each sample.
data(wu_subset) barcode_binary_heatmap(your_SE = wu_subset[, 1:4])