aafGOItem-class {annaffy} | R Documentation |
An abstraction for gene ontology id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class aafGO
.
Objects are generally created by the aafGO
constructor.
Objects can also be created manually by calls of the form
new("aafGOItem", id, name, type)
.
id
:Object of class character
containing GO id
name
:Object of class character
containing textual name
type
:Object of class character
containing GO subtype
evid
:Object of class character
containing GO evidence code
(aafGOItem): Returns textual representation formatted
"id
: name
".
(aafGOItem): Returns a URL to the corresponding gene ontology entry on AmiGO.
(aafGOItem): Returns an HTML representation including the URL link, gene ontology name, and rollover subtype.
Colin A. Smith, annaffy@colinsmith.org