.plotUpstreamLengthDist {abseqR} | R Documentation |
upstreamLengthRange
Given an upstream length range, plot the distribution of upstream sequence lengths.
.plotUpstreamLengthDist(upstreamDirectories, upstreamOut, upstreamLengthRange, lengthType, sampleNames, combinedNames, mashedNames, .save)
upstreamDirectories |
list type. List of sample directories |
upstreamOut |
string type. Output directory |
upstreamLengthRange |
The range of upstream sequences to be included in this plot. This is usually determined by abseqPy and the format should be as follows: "min_max", e.g.: 1_15 means range(1, 15) inclusive.string type. |
lengthType |
string type. "" (the empty string) denotes everything and "_short" denotes a short sequence. abseqPy dictates this because it's used for locating the files. |
sampleNames |
vector type. 1-1 with upstream directories |
combinedNames |
string type. Title friendly "combined" sample names |
mashedNames |
string type. File friendly "mashed-up" sample names |
.save |
logical type. Save Rdata? |
None