.secretionSignalAnalysis {abseqR} | R Documentation |
Generates all the required plots for Secretion signal analysis. This includes upstream length distributions and upstream sequence validity.
.secretionSignalAnalysis(secDirectories, secOut, sampleNames, combinedNames, mashedNames, upstreamRanges, .save = TRUE)
secDirectories |
list type. Secretion signal directories where files are located |
secOut |
string type. Where to dump output |
sampleNames |
vector type. 1-1 with secDirectories |
combinedNames |
string type. Title friendly string |
mashedNames |
string type. File name friendly string |
upstreamRanges |
list type. Upstream ranges for each sample. If length(secDirectories) > 1, the plots will only be generated for upstream ranges that are present in ALL samples. (i.e. the intersection) |
.save |
logical type, save Rdata? |
none